David (dnvrdavid)
Connected studies and activities

American Gut Project Harvard Personal Genome Project Galileo uBiome Upload openSNP UbiQomix Microbiome Exploration The Preference Project Juno's Personal Data Exploratory Genevieve Genome Report GoViral (2014-2016) GenomiX Genome Exploration Genome/Exome Upload 23andMe Upload Personal Data Notebooks Data sharing and ethical oversight Imputer Public Data Sharing
About me

I'm an electrical engineer by day, interested in the human genome, microbiome, and bioinformatics in my spare time.

Public data

23andMe Upload

23andMe-genotyping.txt
(15.0 MB) 23andMe full genotyping data, original format
23andMe-genotyping.vcf.bz2
(5.0 MB) 23andMe full genotyping data, VCF format

American Gut Project

American-Gut-SAMEA3607969-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3607969-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3607969-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3607969-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3607969-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3607969-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3607969-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3607969-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3607969-run-ERR1073004.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3607969-run-ERR1073004.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608070-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608070-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608070-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608070-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608070-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608070-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608070-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608070-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608070-run-ERR1073105.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608070-run-ERR1073105.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610870-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610870-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610870-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610870-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610870-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610870-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610870-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610870-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610870-run-ERR1075325.fastq.gz
(1.4 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610870-run-ERR1075325.fastq.gz
(1.4 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610871-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610871-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610871-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610871-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610871-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610871-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610871-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610871-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610871-run-ERR1075326.fastq.gz
(1.7 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610871-run-ERR1075326.fastq.gz
(1.7 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3611396-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3611396-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3611396-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3611396-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3611396-metadata.json
(16.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3611396-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3611396-metadata.tsv
(12.2 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3611396-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3611396-run-ERR1075907.fastq.gz
(496.9 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3611396-run-ERR1075907.fastq.gz
(496.9 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632364-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632364-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632364-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632364-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632364-metadata.json
(16.6 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632364-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632364-metadata.tsv
(12.8 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632364-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632364-run-ERR1089757.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632364-run-ERR1089757.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632366-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632366-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632366-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632366-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632366-metadata.json
(15.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632366-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632366-metadata.tsv
(12.1 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632366-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632366-run-ERR1089759.fastq.gz
(3.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632366-run-ERR1089759.fastq.gz
(3.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3633184-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3633184-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3633184-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3633184-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3633184-metadata.json
(15.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3633184-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3633184-metadata.tsv
(12.1 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3633184-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3633184-run-ERR1090620.fastq.gz
(1.9 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3633184-run-ERR1090620.fastq.gz
(1.9 MB) American Gut 16S FASTQ raw sequencing data.

Genome/Exome Upload

55101705103949_annotated.vcf
(145.0 MB) User-contributed VCF data
55101705103949_annotated.vcf.metadata.json
(653 bytes) VCF file metadata
60820188474220_WGZ.snp.vcf.gz
(142.3 MB) User-contributed VCF data
60820188474220_WGZ.snp.vcf.metadata.json
(15.7 KB) VCF file metadata

Harvard Personal Genome Project

PGP-Harvard-huEC0E19-surveys.json
(7.7 KB) PGP Harvard survey data, JSON format.

openSNP

7632.json
(103 bytes) links to openSNP user 7632

Personal Data Notebooks

Sense Of Smell and 23andMe data (Known SNP).ipynb
(8.5 KB) A Personal Data Notebook
Sense Of Smell and openSNP Data (New SNPs).ipynb
(8.7 KB) A Personal Data Notebook

uBiome Upload

taxonomy-1.json
(29 bytes) uBiome 16S taxonomy data, JSON format.
taxonomy-2.json
(11.3 KB) uBiome 16S taxonomy data, JSON format.
uBiome-fastq-1.zip
(7.5 MB) uBiome 16S FASTQ raw sequencing data.
uBiome-fastq-2.zip
(29.4 MB) uBiome 16S FASTQ raw sequencing data.