Brian Pardy (brianpardy)
Connected studies and activities

23andMe American Gut Data selfie Fitbit Genome/Exome Data Harvard Personal Genome Project Cross-Genome Error Check Genevieve Genome Report Circles The Preference Project Keeping Pace GenomiX Genome Exploration Public Data Sharing
About me

My blog article on sharing my genome: https://pardydba.wordpress.com/2016/04/11/take-my-1000-genome-please/

My Genevieve report based upon my PGP-Veritas WGS: https://genevieve.herokuapp.com/genome_report/27/

mtDNA U2e1* (GenBank KU530226)

YDNA R-S1217/Z295* (YTree 26BS5)

Testing and analysis completed:

Whole genome sequence (first Veritas Genetics WGS customer)

mtDNA Sanger sequence (FTDNA)

YDNA STR-67 panel (FTDNA)

23andMe v3 chip

American Gut Project 5-site PGP participant sample

Circles in Human Biology photographic submission

Full Genomes Corp third party aDNA/mtDNA/YDNA WGS analysis

DNA.land SNP imputation from 23andMe v3 data

YFull analysis of Y-DNA from Veritas Genetics WGS - in progress

Public data

Genome/Exome Data

hu9B93D0.vcf.gz
(383.4 MB) User-contributed VCF data
hu9B93D0.vcf.metadata.json
(470 bytes) VCF file metadata

23andMe

23andMe-genotyping.txt
(23.6 MB) 23andMe full genotyping data, original format
23andMe-genotyping.vcf.bz2
(8.9 MB) 23andMe full genotyping data, VCF format

American Gut

American-Gut-SAMEA4036965-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4036965-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4036965-metadata.json
(16.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4036965-metadata.tsv
(13.0 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4036965-run-ERR1459220.fastq.gz
(646.9 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4036966-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4036966-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4036966-metadata.json
(16.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4036966-metadata.tsv
(13.0 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4036966-run-ERR1459221.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4036967-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4036967-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4036967-metadata.json
(16.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4036967-metadata.tsv
(13.0 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4036967-run-ERR1459222.fastq.gz
(361.8 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4036968-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4036968-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4036968-metadata.json
(16.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4036968-metadata.tsv
(13.0 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4036968-run-ERR1459223.fastq.gz
(436.1 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4354028-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4354028-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4354028-metadata.json
(18.1 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4354028-metadata.tsv
(14.0 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4354028-run-ERR1546005.fastq.gz
(217 bytes) American Gut 16S FASTQ raw sequencing data.

Harvard Personal Genome Project

PGP-Harvard-hu9B93D0-surveys.json
(13.6 KB) PGP Harvard survey data, JSON format.

Data selfie

26BS5.gtype.20131111.out
(3.3 MB)
26BS5.gtype.20151121supp.out
(1.0 MB)
26BS5.strcall203.lobystr203report.090913.ftdna.out
(1.3 KB)
26BS5.strcall203.lobystr203report.090913.out
(169.5 KB)
26BS5.variantCompare.20140314.named.tab
(9.2 MB)
26BS5.vep_stats.html
(63.9 KB)
26BS5.yknot.20151008.txt
(19.9 KB)
B2888-FASTA.fasta
(16.6 KB)
WGC069899D.vcf.gz
(383.4 MB)
haplogroup-r.org_WGC069899D_report.txt
(4.5 KB)
snpEff_genes.tsv
(12.3 MB)
snpEff_summary.html
(530.3 KB)