Patrick Tagert (Ysearcher)
Connected studies and activities

GenomiX Genome Exploration Data sharing and ethical oversight Gencove Harvard Personal Genome Project Data Selfies American Gut Project 23andMe Upload Personal Data Notebooks Cross-Genome Error Check Genevieve Genome Report lineage The Preference Project Public Data Sharing
About me

Registered nurse (operating room) for over 27 years, "semi-retired". PGP participant, tested by at least a dozen retail and/or non-profit genomics testing companies/institutions over the past ten years, and ten members of my immediate family (spanning four generations) tested by various retail genomics testing companies, & whole exomes (x2) for immediate family. Great interest in archaeology (particularly, forensic genomics) and human origins, but primary interests shifting to molecular genetics.

Sporadic ALS,LOAD (APOE-e2/e3), PD, and IGE, in immediate and extended family, no causal variants identified to date, Feb. 2019. Our family is very open to working with researchers attempting to decipher these devastating disorders. sALS trio, comprised of PGP whole genome (VCF only), and two whole exomes as noted below. Please contact me directly (ysearcher@mac.com) if you wish to use whole exome data files for additional family members. (Platform: Illumina HiSeq; Enrichment: Nextera Rapid Capture Expanded Exome Kit - FC-140-1006, Average 70X Coverage, BAM, FASTQ and VCF files available. Five autosomal recessive variants (heterozygous only) identified to date, including HEXA (R170W) We are currently focused on searching for clinically significant de novo mutations and autosomal recessive compound heterozygous variants.

I have lately become increasingly aware of the need to use a variety of technologies to get an accurate genome assessment, e.g, Next Generation Sequencing, Long Read Sequencing (Pac-Bio), genotyping, Sanger Sequencing (for confirmation of variants), HLA imputation from NGS & Pac-Bio, NanoPore MINION long read sequencing, virtual karyotyping, etc., and I continue to explore any affordable avenues to access those technologies.

Public data

American Gut Project

American-Gut-SAMEA3612275-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612275-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612275-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612275-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612275-run-ERR1076808.fastq.gz
(2.9 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3612276-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612276-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612276-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612276-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612276-run-ERR1076809.fastq.gz
(3.9 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3612277-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612277-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612277-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612277-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612277-run-ERR1076810.fastq.gz
(2.9 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3612278-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3612278-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3612278-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3612278-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3612278-run-ERR1076811.fastq.gz
(1.8 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3613080-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3613080-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3613080-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3613080-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3613080-run-ERR1077651.fastq.gz
(393.3 KB) American Gut 16S FASTQ raw sequencing data.

Data Selfies

Tagert_mtDNA_FullSequence.pdf
(2.7 MB)

Harvard Personal Genome Project

PGP-Harvard-hu76CAA5-surveys.json
(15.7 KB) PGP Harvard survey data, JSON format.
PGP-Harvard-hu76CAA5-var.tsv.bz2
(225.8 MB) PGP Harvard genome, Complete Genomics var file format.
PGP-Harvard-hu76CAA5-var.vcf.bz2
(32.9 MB) PGP Harvard genome, VCF file. Derived from Complete Genomics var file.

23andMe Upload

23andMe-genotyping.txt
(23.8 MB) 23andMe full genotyping data, original format
23andMe-genotyping.vcf.bz2
(9.4 KB) 23andMe full genotyping data, VCF format