David (dnvrdavid)
Connected studies and activities

GoViral (2014-2016) Galileo GenomiX Genome Exploration openSNP Juno's Personal Data Exploratory Personal Data Notebooks 23andMe Upload American Gut Project Genevieve Genome Report Genome/Exome Upload uBiome Upload Harvard Personal Genome Project The Preference Project Public Data Sharing
About me

I'm an electrical engineer by day, interested in the human genome, microbiome, and bioinformatics in my spare time.

Public data

openSNP

7632.json
(103 bytes) links to openSNP user 7632

Personal Data Notebooks

Sense Of Smell and 23andMe data (Known SNP).ipynb
(8.5 KB) A Personal Data Notebook
Sense Of Smell and openSNP Data (New SNPs).ipynb
(8.7 KB) A Personal Data Notebook

Harvard Personal Genome Project

PGP-Harvard-huEC0E19-surveys.json
(7.7 KB) PGP Harvard survey data, JSON format.

23andMe Upload

23andMe-genotyping.txt
(15.0 MB) 23andMe full genotyping data, original format
23andMe-genotyping.vcf.bz2
(5.0 MB) 23andMe full genotyping data, VCF format

uBiome Upload

taxonomy-1.json
(29 bytes) uBiome 16S taxonomy data, JSON format.
taxonomy-2.json
(11.3 KB) uBiome 16S taxonomy data, JSON format.
uBiome-fastq-1.zip
(7.5 MB) uBiome 16S FASTQ raw sequencing data.
uBiome-fastq-2.zip
(29.4 MB) uBiome 16S FASTQ raw sequencing data.

Genome/Exome Upload

55101705103949_annotated.vcf
(145.0 MB) User-contributed VCF data
55101705103949_annotated.vcf.metadata.json
(653 bytes) VCF file metadata

American Gut Project

American-Gut-SAMEA3607969-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3607969-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3607969-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3607969-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3607969-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3607969-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3607969-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3607969-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3607969-run-ERR1073004.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3607969-run-ERR1073004.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608070-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608070-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608070-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608070-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608070-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608070-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608070-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608070-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608070-run-ERR1073105.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608070-run-ERR1073105.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610870-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610870-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610870-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610870-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610870-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610870-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610870-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610870-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610870-run-ERR1075325.fastq.gz
(1.4 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610870-run-ERR1075325.fastq.gz
(1.4 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610871-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610871-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3610871-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610871-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3610871-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610871-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3610871-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610871-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3610871-run-ERR1075326.fastq.gz
(1.7 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3610871-run-ERR1075326.fastq.gz
(1.7 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3611396-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3611396-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3611396-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3611396-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3611396-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3611396-metadata.json
(16.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3611396-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3611396-metadata.tsv
(12.2 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3611396-run-ERR1075907.fastq.gz
(496.9 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3611396-run-ERR1075907.fastq.gz
(496.9 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632364-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632364-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632364-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632364-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632364-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632364-metadata.json
(16.6 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632364-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632364-metadata.tsv
(12.8 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632364-run-ERR1089757.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632364-run-ERR1089757.fastq.gz
(2.6 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632366-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632366-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3632366-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632366-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3632366-metadata.json
(15.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632366-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3632366-metadata.tsv
(12.1 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632366-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3632366-run-ERR1089759.fastq.gz
(3.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3632366-run-ERR1089759.fastq.gz
(3.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3633184-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3633184-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3633184-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3633184-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3633184-metadata.json
(15.9 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3633184-metadata.json
(2 bytes) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3633184-metadata.tsv
(12.1 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3633184-metadata.tsv
(2 bytes) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3633184-run-ERR1090620.fastq.gz
(1.9 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3633184-run-ERR1090620.fastq.gz
(1.9 MB) American Gut 16S FASTQ raw sequencing data.