Jim Bearden (jbearden)
Connected studies and activities

American Gut Project GenomiX Genome Exploration Harvard Personal Genome Project Wild Life of Our Homes Personal Data Notebooks FamilyTreeDNA integration 23andMe Upload Data sharing and ethical oversight UbiQomix Microbiome Exploration The Preference Project Genevieve Genome Report Circles Imputer Public Data Sharing
About me

I joined the Personal Genome Project in its early stages, when I first heard about it. Having done research on DNA structure and DNA-protein interactions, I was interested in the possibility of analyzing my own genome to see what I could find out about myself. Since I live a long way from Harvard, though, and have not been able to make it to any of the blood collection events in other places, I don't know if that's going to happen. I'm going to try getting an analysis from "23andMe" to see what I can do with that, and I hope I can learn more from participation in "Open Humans" about what kinds of useful analyses can be done on my genome and those of others.

Public data

Harvard Personal Genome Project

PGP-Harvard-hu851AB8-surveys.json
(14.9 KB) PGP Harvard survey data, JSON format.

Wild Life of Our Homes

bacteria-kit-739-graphs.png
(475.1 KB) Visualization of Wild Life of Our Homes bacteria data
bacteria-kit-739.csv.bz2
(610.7 KB) Bacteria 16S-based OTU counts and taxonomic classifications
fungi-kit-739-graphs.png
(184.8 KB) Visualization of Wild Life of Our Homes fungi data
fungi-kit-739.csv.bz2
(321.3 KB) Fungi ITS-based OTU counts and taxonomic classifications
home-data-kit-739.json
(348 bytes) Geographical and architectural information about residence

American Gut Project

American-Gut-SAMEA3901205-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3901205-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3901205-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3901205-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3901205-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3901205-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3901205-metadata.json
(16.8 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3901205-metadata.json
(16.8 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3901205-metadata.json
(16.8 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3901205-metadata.tsv
(12.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3901205-metadata.tsv
(12.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3901205-metadata.tsv
(12.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3901205-run-ERR1316082.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3901205-run-ERR1316082.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3901205-run-ERR1316082.fastq.gz
(1.1 MB) American Gut 16S FASTQ raw sequencing data.

23andMe Upload

23andMe-genotyping.txt
(15.0 MB) 23andMe full genotyping data, original format
23andMe-genotyping.vcf.bz2
(4.9 MB) 23andMe full genotyping data, VCF format