Chris Durall (Chris_Durall)
Connected studies and activities

lineage FamilyTreeDNA integration Moves connection Personal Data Notebooks Gencove The Preference Project GoViral Gut Instinct openSNP Imputer Data sharing and ethical oversight Cross-Genome Error Check Keeping Pace Genevieve Genome Report Circles American Gut Project GoViral (2014-2016) Harvard Personal Genome Project GenomiX Genome Exploration Wild Life of Our Homes AncestryDNA Upload 23andMe Upload Fitbit Connection Runkeeper connection UbiQomix Microbiome Exploration Public Data Sharing

Public data

23andMe Upload

23andMe-genotyping.txt
(24.4 MB) 23andMe full genotyping data, original format
23andMe-genotyping.vcf.bz2
(9.3 MB) 23andMe full genotyping data, VCF format

American Gut Project

American-Gut-SAMEA3608838-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608838-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3608838-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608838-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3608838-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608838-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3608838-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608838-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3608838-run-ERR1073893.fastq.gz
(995.1 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3608838-run-ERR1073893.fastq.gz
(995.1 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609591-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609591-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609591-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609591-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609591-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609591-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609591-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609591-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609591-run-ERR1074353.fastq.gz
(1.8 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609591-run-ERR1074353.fastq.gz
(1.8 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609592-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609592-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609592-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609592-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609592-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609592-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609592-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609592-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609592-run-ERR1074354.fastq.gz
(380 bytes) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609592-run-ERR1074354.fastq.gz
(380 bytes) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609593-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609593-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609593-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609593-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609593-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609593-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609593-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609593-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609593-run-ERR1074355.fastq.gz
(752 bytes) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609593-run-ERR1074355.fastq.gz
(752 bytes) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609594-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609594-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA3609594-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609594-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA3609594-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609594-metadata.json
(15.3 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA3609594-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609594-metadata.tsv
(11.5 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA3609594-run-ERR1074356.fastq.gz
(1.3 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA3609594-run-ERR1074356.fastq.gz
(1.3 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4394105-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4394105-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4394105-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4394105-metadata.tsv
(13.8 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4394105-run-ERR1597166.fastq.gz
(1.3 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4394106-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4394106-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4394106-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4394106-metadata.tsv
(13.8 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4394106-run-ERR1597167.fastq.gz
(364.6 KB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4394107-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4394107-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4394107-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4394107-metadata.tsv
(13.9 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4394107-run-ERR1597168.fastq.gz
(2.0 MB) American Gut 16S FASTQ raw sequencing data.
American-Gut-SAMEA4496044-ena-info.json
(2.3 KB) American Gut sample accession data from the European Nucleotide Archive, JSON format.
American-Gut-SAMEA4496044-ena-info.tsv
(1.8 KB) American Gut sample accession data from the European Nucleotide Archive, TSV format.
American-Gut-SAMEA4496044-metadata.json
(18.0 KB) American Gut sample survey data and metadata, JSON format.
American-Gut-SAMEA4496044-metadata.tsv
(13.8 KB) American Gut sample survey data and metadata, TSV format.
American-Gut-SAMEA4496044-run-ERR1678454.fastq.gz
(2.0 MB) American Gut 16S FASTQ raw sequencing data.

AncestryDNA Upload

AncestryDNA-genotyping.txt
(18.0 MB) AncestryDNA full genotyping data, original format
AncestryDNA-genotyping.vcf.bz2
(6.7 MB) AncestryDNA full genotyping data, VCF format

GoViral (2014-2016)

go-viral_sickness-and-viral-profiling_20160103T191923Z.tar.gz
(495 bytes)

Harvard Personal Genome Project

PGP-Harvard-hu4B0812-surveys.json
(7.3 KB) PGP Harvard survey data, JSON format.
PGP-Harvard-hu4B0812-var.tsv.bz2
(218.5 MB) PGP Harvard genome, Complete Genomics var file format.
PGP-Harvard-hu4B0812-var.vcf.bz2
(33.0 MB) PGP Harvard genome, VCF file. Derived from Complete Genomics var file.

Imputer

member.imputed.vcf.bz2
(163.0 MB) Imputed genotypes from Imputer

lineage

lineage_GRCh37.csv
(23.8 MB) SNPs merged (if applicable) and mapped relative to the GRCh37 assembly
lineage_GRCh38.csv
(23.8 MB) SNPs merged (if applicable) and mapped relative to the GRCh38 assembly
lineage_NCBI36.csv
(23.8 MB) SNPs merged (if applicable) and mapped relative to the NCBI36 assembly
lineage_discrepant_snps.csv
(12.5 KB) Discrepant SNPs found while merging files

Runkeeper connection

Runkeeper-activity-data-2016.json
(680 bytes) Runkeeper GPS maps and imported activity data.

Wild Life of Our Homes

bacteria-kit-250.csv.bz2
(616.5 KB) Bacteria 16S-based OTU counts and taxonomic classifications
fungi-kit-250.csv.bz2
(322.2 KB) Fungi ITS-based OTU counts and taxonomic classifications
home-data-kit-250.json
(347 bytes) Geographical and architectural information about residence